Joint TargetInfectX/InfectX publications

2016

    • Casanova A, Low SH, Emmenlauer M, Conde-Alvarez R, Salcedo SP, Gorvel JP, Dehio C.(2016)

      Microscopy-based Assays for High-throughput Screening of Host Factors Involved in Brucella Infection of Hela Cells.

      J Vis Exp. 2016 Aug 5;(114). doi: 10.3791/54263.

2015

    • Kreibich, S., Emmenlauer, M., Fredlund, J., Rämö, P., Münz, C., Dehio, C., Enninga, J., Hardt, W.-D.(2015)

      Autpophagy Proteins Promote Repair of Endosomal Membranes Damaged by the Salmonella Type Three Secretion System 1

      Cell Host and Microbe, doi: 10.1016/j.chom.2015.10.015
    • Schmich, F., Szczurek, E., Kreibich, S., Dilling, S., Andritschke, D., Casanova, A., Low, S.H., Eicher, S., Muntwiler, S., Emmenlauer, M., Rämö, P., Conde-Alvarez R., von Mering, C., Hardt, W.-D., Dehio, C., Beerenwinkel, N.(2015)

      gespeR: a statistical model for deconvoluting off-target-confounded RNA interference screens

      Genome Biology, doi: 10.1186/s13059-015-0783-1
    • Kreibich, S., Hardt, W.-D.(2015)

      Experimental approaches to phenotypic diversity in infection

      Current Opinion in Microbiology, doi:10.1016/j.mib.2015.06.007
    • Siebourg-Polster, J., Mudrak, D., Emmenlauer, M., Rämö, P., Dehio, C., Greber, U., Fröhlich, H., Beerenwinkel N. (2015)

      NEMix: Single-cell nested effects models for probabilistic pathway stimulation.

      PLoS Comput. Biol. 11(4):e1004078
    • Kühbacher A, Emmenlauer M, Rämö P, Kafai N, Dehio C, Cossart P, Pizarro-Cerda J.(2015) Genome-wide siRNA Screen Identifies Complementary Signaling Pathways Involved in Listeria Infection and Reveals Different Actin Nucleation Mechanisms during Listeria Cell Invasion and Actin Comet Tail Formation.

      mBio. 6(3):e00598-15
    • Szlarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, Simonovic M, Roth A, Santos A, Tsafou KP, Kuhn M, Bork P, Jensen LJ, von Mering C (2015) STRING v10: protein-protein interaction networks, integrated over the tree of life.

      Nucleic Acids Res. 43, D447-52

2014

    • Rämö P, Drewek A, Arrieumerlou C, Beerenwinkel N , Ben-Tekaya H, Cardel B, Casanova A, Conde-Alvarez R, Cossart P, Csúcs G, Eicher S, Emmenlauer M, Greber U, Hardt WD, Helenius A, Kasper C, Kaufmann A, Kreibich S, Kühbacher A, Kunszt P, Low SH, Mercer J, Mudrak D, Muntwiler S, Pelkmans L, Pizarro-Cerda J, Podvinec M, Pujadas E, Rinn B, Rouilly V, Schmich F, Siebourg-Polster J, Snijder B, Stebler M, Studer G, Szczurek E, Truttmann M, von Mering C, Vonderheit A, Yakimovich A, Bühlmann P, Dehio C(2014) Simultaneous analysis of large-scale RNAi screens for pathogen entry.

      BMC Genomics. 15:1162
    • Okujava R, Guye P, Lu YY, Mistl C, Polus F, Vayssier-Taussat M, Halin C, Rolink AG, Dehio C(2014) A translocated Effector Required for Bartonella Dissemination from Derma to Blood Safeguards Migratory Host Cells from Damage by Co-translocated Effectors.

      PLoS pathog. 10:e1004187
    • Liberali, P., Snijder, B. and Pelkmans, L. (2014)

      A hierarchical map of regulatory genetic interactions in membrane trafficking.Cell 157, 1473-87.

    • Omasits, U., Ahrens, C.H., Müller, S., Wollscheid, B. (2014)

      Protter: interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics. 30(6):884-6.

    • Stekhoven, D.J., Omasits, U., Quebatte, M., Dehio, C., Ahrens, C.H. (2014)

      Proteome-wide identification of predominant subcellular protein localizations in a bacterial model organism. J. Proteomics 99:123-37.

    • Kühbacher, A., Novy K., Sachse M., Nilges-Moya M., Wollscheid B., Cossart P., Pizarro-Cerdá J. (2014)

      Late endosomal compartments control Listeria monocytogenes cell entry and vacuolar escape. submitted.

    • Liu, Y., Chen., J., Sethi, A., Li, Q.K., Chen, L., Collins, B., Gillet, L.C., Wollscheid, B., Zhang, H., Aebersold, R. (2014)

      Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness. Mol. Cell. Proteomics. PMID: 24741114 [Epub ahead of print]

    • Meier, R., Franceschini, A., Horvath, P., Tetard, M., Mancini, R., von Mering, C., Helenius, A., Lozach, P.Y. (2014)

      Genome-wide siRNA screens reveal VAMP3 as a novel host factor required for Uukuniemi virus late penetration. J Virol. 88:8565-8578

    • Schmich, F., Szczurek, E., Kreibich, S., Dilling, S., Andritschke, D., Casanova, A., Low, S.H., Eicher, S., Muntwiler, S., Emmenlauer, M., Rämö, P., Conde-Alvarez, R., von Mering, C., Hardt, W.-D., Dehio C., and Beerenwinkel, N. (2014)

      Deconvoluting off-target-confounded RNA interference screens in revision

2013 publications under InfectX

2012, 2011, 2010 publications under InfectX